| 2006-12-30 | CoventryvSouthendChampionship · England | 1–1 | Championship · England |
| 2006-12-26 | NorwichvSouthendChampionship · England | 0–0 | Championship · England |
| 2006-12-23 | SouthendvBirminghamChampionship · England | 0–4 | Championship · England |
| 2006-12-15 | LutonvSouthendChampionship · England | 0–0 | Championship · England |
| 2006-12-09 | SouthendvSouthamptonChampionship · England | 2–1 | Championship · England |
| 2006-12-02 | SouthendvWolvesChampionship · England | 0–1 | Championship · England |
| 2006-11-28 | BarnsleyvSouthendChampionship · England | 2–0 | Championship · England |
| 2006-11-25 | ColchestervSouthendChampionship · England | 3–0 | Championship · England |
| 2006-11-18 | SouthendvPlymouthChampionship · England | 1–1 | Championship · England |
| 2006-11-11 | SouthendvPrestonChampionship · England | 0–0 | Championship · England |
| 2006-11-04 | WolvesvSouthendChampionship · England | 3–1 | Championship · England |
| 2006-10-31 | SouthendvHullChampionship · England | 2–3 | Championship · England |
| 2006-10-28 | LeedsvSouthendChampionship · England | 2–0 | Championship · England |
| 2006-10-21 | SouthendvIpswichChampionship · England | 1–3 | Championship · England |
| 2006-10-17 | BurnleyvSouthendChampionship · England | 0–0 | Championship · England |
| 2006-10-13 | SouthendvCoventryChampionship · England | 2–3 | Championship · England |
| 2006-09-30 | DerbyvSouthendChampionship · England | 3–0 | Championship · England |
| 2006-09-24 | SouthendvCardiffChampionship · England | 0–3 | Championship · England |
| 2006-09-16 | West BromvSouthendChampionship · England | 1–1 | Championship · England |
| 2006-09-12 | SouthendvNorwichChampionship · England | 3–3 | Championship · England |
| 2006-09-09 | SouthendvSheffield WedsChampionship · England | 0–0 | Championship · England |
| 2006-08-26 | LeicestervSouthendChampionship · England | 1–0 | Championship · England |
| 2006-08-19 | SouthendvSunderlandChampionship · England | 3–1 | Championship · England |
| 2006-08-12 | QPRvSouthendChampionship · England | 2–0 | Championship · England |
| 2006-08-08 | Crystal PalacevSouthendChampionship · England | 3–1 | Championship · England |
| 2006-08-05 | SouthendvStokeChampionship · England | 1–0 | Championship · England |
| 2006-05-06 | SouthendvBristol CityLeague One · England | 1–0 | League One · England |
| 2006-04-29 | SwanseavSouthendLeague One · England | 2–2 | League One · England |
| 2006-04-22 | SouthendvDoncasterLeague One · England | 0–1 | League One · England |
| 2006-04-17 | BarnsleyvSouthendLeague One · England | 2–2 | League One · England |
| 2006-04-14 | SouthendvGillinghamLeague One · England | 0–1 | League One · England |
| 2006-04-08 | SouthendvBlackpoolLeague One · England | 2–1 | League One · England |
| 2006-04-01 | BournemouthvSouthendLeague One · England | 1–1 | League One · England |
| 2006-03-25 | SouthendvHartlepoolLeague One · England | 3–0 | League One · England |
| 2006-03-18 | Milton Keynes DonsvSouthendLeague One · England | 2–1 | League One · England |
| 2006-03-10 | SouthendvScunthorpeLeague One · England | 3–0 | League One · England |
| 2006-03-04 | ColchestervSouthendLeague One · England | 0–3 | League One · England |
| 2006-02-25 | SouthendvWalsallLeague One · England | 0–0 | League One · England |
| 2006-02-18 | ChesterfieldvSouthendLeague One · England | 3–4 | League One · England |
| 2006-02-14 | BrentfordvSouthendLeague One · England | 2–0 | League One · England |
| 2006-02-10 | SouthendvRotherhamLeague One · England | 2–0 | League One · England |
| 2006-02-04 | YeovilvSouthendLeague One · England | 0–2 | League One · England |
| 2006-01-27 | SouthendvSwindonLeague One · England | 2–0 | League One · England |
| 2006-01-21 | TranmerevSouthendLeague One · England | 0–0 | League One · England |
| 2006-01-14 | SouthendvBrentfordLeague One · England | 4–1 | League One · England |
| 2006-01-07 | OldhamvSouthendLeague One · England | 0–0 | League One · England |
| 2006-01-02 | BlackpoolvSouthendLeague One · England | 1–2 | League One · England |