| 2016-12-30 | Milton Keynes DonsvSwindonLeague One · England | 3–2 | League One · England |
| 2016-12-26 | Milton Keynes DonsvCharltonLeague One · England | 0–1 | League One · England |
| 2016-12-17 | GillinghamvMilton Keynes DonsLeague One · England | 1–0 | League One · England |
| 2016-12-10 | Milton Keynes DonsvAFC WimbledonLeague One · England | 1–0 | League One · England |
| 2016-11-26 | CoventryvMilton Keynes DonsLeague One · England | 1–2 | League One · England |
| 2016-11-22 | Milton Keynes DonsvChesterfieldLeague One · England | 2–3 | League One · England |
| 2016-11-19 | Bristol RvsvMilton Keynes DonsLeague One · England | 0–0 | League One · England |
| 2016-11-12 | Milton Keynes DonsvWalsallLeague One · England | 1–1 | League One · England |
| 2016-10-29 | Sheffield UnitedvMilton Keynes DonsLeague One · England | 2–1 | League One · England |
| 2016-10-22 | Milton Keynes DonsvSouthendLeague One · England | 0–3 | League One · England |
| 2016-10-18 | Milton Keynes DonsvBristol RvsLeague One · England | 3–3 | League One · England |
| 2016-10-15 | ScunthorpevMilton Keynes DonsLeague One · England | 2–1 | League One · England |
| 2016-10-09 | Milton Keynes DonsvPort ValeLeague One · England | 0–1 | League One · England |
| 2016-10-01 | OldhamvMilton Keynes DonsLeague One · England | 0–2 | League One · England |
| 2016-09-27 | Milton Keynes DonsvBuryLeague One · England | 1–3 | League One · England |
| 2016-09-24 | Fleetwood TownvMilton Keynes DonsLeague One · England | 1–4 | League One · England |
| 2016-09-17 | Milton Keynes DonsvOxfordLeague One · England | 0–0 | League One · England |
| 2016-09-10 | BoltonvMilton Keynes DonsLeague One · England | 1–1 | League One · England |
| 2016-09-04 | NorthamptonvMilton Keynes DonsLeague One · England | 3–2 | League One · England |
| 2016-08-27 | Milton Keynes DonsvPeterboroLeague One · England | 0–2 | League One · England |
| 2016-08-20 | RochdalevMilton Keynes DonsLeague One · England | 0–1 | League One · England |
| 2016-08-16 | Milton Keynes DonsvBradfordLeague One · England | 1–2 | League One · England |
| 2016-08-13 | Milton Keynes DonsvMillwallLeague One · England | 2–2 | League One · England |
| 2016-08-06 | ShrewsburyvMilton Keynes DonsLeague One · England | 0–1 | League One · England |
| 2016-05-07 | Milton Keynes DonsvNott'm ForestChampionship · England | 1–2 | Championship · England |
| 2016-04-30 | IpswichvMilton Keynes DonsChampionship · England | 3–2 | Championship · England |
| 2016-04-23 | Milton Keynes DonsvBrentfordChampionship · England | 1–4 | Championship · England |
| 2016-04-19 | Sheffield WedsvMilton Keynes DonsChampionship · England | 0–0 | Championship · England |
| 2016-04-16 | PrestonvMilton Keynes DonsChampionship · England | 1–1 | Championship · England |
| 2016-04-09 | Milton Keynes DonsvRotherhamChampionship · England | 0–4 | Championship · England |
| 2016-04-05 | Milton Keynes DonsvWolvesChampionship · England | 1–2 | Championship · England |
| 2016-04-02 | FulhamvMilton Keynes DonsChampionship · England | 2–1 | Championship · England |
| 2016-03-19 | Milton Keynes DonsvBrightonChampionship · England | 1–2 | Championship · England |
| 2016-03-12 | HullvMilton Keynes DonsChampionship · England | 1–1 | Championship · England |
| 2016-03-08 | CharltonvMilton Keynes DonsChampionship · England | 0–0 | Championship · England |
| 2016-03-05 | Milton Keynes DonsvQPRChampionship · England | 2–0 | Championship · England |
| 2016-02-27 | BlackburnvMilton Keynes DonsChampionship · England | 3–2 | Championship · England |
| 2016-02-23 | Milton Keynes DonsvHuddersfieldChampionship · England | 1–1 | Championship · England |
| 2016-02-20 | Milton Keynes DonsvBristol CityChampionship · England | 0–2 | Championship · England |
| 2016-02-13 | DerbyvMilton Keynes DonsChampionship · England | 0–1 | Championship · England |
| 2016-02-09 | Milton Keynes DonsvMiddlesbroughChampionship · England | 1–1 | Championship · England |
| 2016-02-06 | CardiffvMilton Keynes DonsChampionship · England | 0–0 | Championship · England |
| 2016-01-23 | BoltonvMilton Keynes DonsChampionship · England | 3–1 | Championship · England |
| 2016-01-16 | Milton Keynes DonsvReadingChampionship · England | 1–0 | Championship · England |
| 2016-01-12 | Milton Keynes DonsvBurnleyChampionship · England | 0–5 | Championship · England |
| 2016-01-02 | LeedsvMilton Keynes DonsChampionship · England | 1–1 | Championship · England |