| 2006-12-30 | BrechinvCowdenbeathLeague One · Scotland | 4–2 | League One · Scotland |
| 2006-12-23 | CowdenbeathvAlloaLeague One · Scotland | 5–2 | League One · Scotland |
| 2006-12-16 | StirlingvCowdenbeathLeague One · Scotland | 1–0 | League One · Scotland |
| 2006-12-02 | CowdenbeathvStranraerLeague One · Scotland | 4–2 | League One · Scotland |
| 2006-11-25 | MortonvCowdenbeathLeague One · Scotland | 1–0 | League One · Scotland |
| 2006-11-11 | CowdenbeathvForfarLeague One · Scotland | 3–2 | League One · Scotland |
| 2006-11-04 | CowdenbeathvRaith RvsLeague One · Scotland | 1–2 | League One · Scotland |
| 2006-10-28 | PeterheadvCowdenbeathLeague One · Scotland | 1–0 | League One · Scotland |
| 2006-10-21 | CowdenbeathvAyrLeague One · Scotland | 1–1 | League One · Scotland |
| 2006-10-14 | AlloavCowdenbeathLeague One · Scotland | 2–1 | League One · Scotland |
| 2006-09-30 | CowdenbeathvStirlingLeague One · Scotland | 2–2 | League One · Scotland |
| 2006-09-23 | StranraervCowdenbeathLeague One · Scotland | 1–0 | League One · Scotland |
| 2006-09-16 | ForfarvCowdenbeathLeague One · Scotland | 1–1 | League One · Scotland |
| 2006-09-09 | CowdenbeathvMortonLeague One · Scotland | 1–2 | League One · Scotland |
| 2006-09-03 | CowdenbeathvPeterheadLeague One · Scotland | 4–2 | League One · Scotland |
| 2006-08-26 | Raith RvsvCowdenbeathLeague One · Scotland | 1–3 | League One · Scotland |
| 2006-08-19 | CowdenbeathvBrechinLeague One · Scotland | 1–3 | League One · Scotland |
| 2006-08-12 | AyrvCowdenbeathLeague One · Scotland | 0–4 | League One · Scotland |
| 2006-08-05 | CowdenbeathvAlloaLeague One · Scotland | 6–1 | League One · Scotland |
| 2006-04-29 | CowdenbeathvElginLeague Two · Scotland | 2–1 | League Two · Scotland |
| 2006-04-22 | Queens ParkvCowdenbeathLeague Two · Scotland | 2–2 | League Two · Scotland |
| 2006-04-15 | CowdenbeathvEast StirlingLeague Two · Scotland | 5–0 | League Two · Scotland |
| 2006-04-08 | CowdenbeathvAlbion RvsLeague Two · Scotland | 2–1 | League Two · Scotland |
| 2006-04-04 | East StirlingvCowdenbeathLeague Two · Scotland | 1–1 | League Two · Scotland |
| 2006-04-01 | StenhousemuirvCowdenbeathLeague Two · Scotland | 1–2 | League Two · Scotland |
| 2006-03-28 | CowdenbeathvElginLeague Two · Scotland | 5–2 | League Two · Scotland |
| 2006-03-25 | CowdenbeathvArbroathLeague Two · Scotland | 4–2 | League Two · Scotland |
| 2006-03-21 | CowdenbeathvEast FifeLeague Two · Scotland | 4–1 | League Two · Scotland |
| 2006-03-18 | MontrosevCowdenbeathLeague Two · Scotland | 0–3 | League Two · Scotland |
| 2006-03-11 | BerwickvCowdenbeathLeague Two · Scotland | 1–0 | League Two · Scotland |
| 2006-02-25 | ElginvCowdenbeathLeague Two · Scotland | 0–4 | League Two · Scotland |
| 2006-02-18 | CowdenbeathvQueens ParkLeague Two · Scotland | 6–0 | League Two · Scotland |
| 2006-02-11 | Albion RvsvCowdenbeathLeague Two · Scotland | 1–3 | League Two · Scotland |
| 2006-02-04 | CowdenbeathvStenhousemuirLeague Two · Scotland | 1–1 | League Two · Scotland |
| 2006-01-28 | ArbroathvCowdenbeathLeague Two · Scotland | 4–1 | League Two · Scotland |
| 2006-01-21 | CowdenbeathvMontroseLeague Two · Scotland | 2–0 | League Two · Scotland |
| 2006-01-14 | CowdenbeathvBerwickLeague Two · Scotland | 1–1 | League Two · Scotland |
| 2006-01-02 | East FifevCowdenbeathLeague Two · Scotland | 2–1 | League Two · Scotland |