| 2016-12-31 | SouthendvCharltonLeague One · England | 1–1 | League One · England |
| 2016-12-26 | Milton Keynes DonsvCharltonLeague One · England | 0–1 | League One · England |
| 2016-12-21 | MillwallvCharltonLeague One · England | 3–1 | League One · England |
| 2016-12-17 | CharltonvPeterboroLeague One · England | 0–2 | League One · England |
| 2016-12-10 | BradfordvCharltonLeague One · England | 0–0 | League One · England |
| 2016-11-26 | CharltonvSheffield UnitedLeague One · England | 1–1 | League One · England |
| 2016-11-22 | Bristol RvsvCharltonLeague One · England | 1–5 | League One · England |
| 2016-11-19 | CharltonvPort ValeLeague One · England | 2–0 | League One · England |
| 2016-11-12 | SwindonvCharltonLeague One · England | 3–0 | League One · England |
| 2016-10-29 | CharltonvChesterfieldLeague One · England | 1–0 | League One · England |
| 2016-10-22 | GillinghamvCharltonLeague One · England | 1–1 | League One · England |
| 2016-10-18 | Port ValevCharltonLeague One · England | 1–1 | League One · England |
| 2016-10-15 | CharltonvCoventryLeague One · England | 3–0 | League One · England |
| 2016-10-01 | CharltonvRochdaleLeague One · England | 0–1 | League One · England |
| 2016-09-27 | CharltonvOldhamLeague One · England | 1–1 | League One · England |
| 2016-09-24 | OxfordvCharltonLeague One · England | 1–1 | League One · England |
| 2016-09-20 | ScunthorpevCharltonLeague One · England | 0–0 | League One · England |
| 2016-09-17 | CharltonvAFC WimbledonLeague One · England | 1–2 | League One · England |
| 2016-09-10 | Fleetwood TownvCharltonLeague One · England | 2–2 | League One · England |
| 2016-08-27 | CharltonvBoltonLeague One · England | 1–1 | League One · England |
| 2016-08-20 | WalsallvCharltonLeague One · England | 1–2 | League One · England |
| 2016-08-16 | CharltonvShrewsburyLeague One · England | 3–0 | League One · England |
| 2016-08-13 | CharltonvNorthamptonLeague One · England | 1–1 | League One · England |
| 2016-08-06 | BuryvCharltonLeague One · England | 2–0 | League One · England |
| 2016-05-07 | CharltonvBurnleyChampionship · England | 0–3 | Championship · England |
| 2016-04-30 | LeedsvCharltonChampionship · England | 1–2 | Championship · England |
| 2016-04-23 | CharltonvBrightonChampionship · England | 1–3 | Championship · England |
| 2016-04-19 | BoltonvCharltonChampionship · England | 0–0 | Championship · England |
| 2016-04-16 | CharltonvDerbyChampionship · England | 0–1 | Championship · England |
| 2016-04-09 | QPRvCharltonChampionship · England | 2–1 | Championship · England |
| 2016-04-05 | IpswichvCharltonChampionship · England | 0–0 | Championship · England |
| 2016-04-02 | CharltonvBirminghamChampionship · England | 2–1 | Championship · England |
| 2016-03-19 | Sheffield WedsvCharltonChampionship · England | 3–0 | Championship · England |
| 2016-03-13 | CharltonvMiddlesbroughChampionship · England | 2–0 | Championship · England |
| 2016-03-08 | CharltonvMilton Keynes DonsChampionship · England | 0–0 | Championship · England |
| 2016-03-05 | BrentfordvCharltonChampionship · England | 1–2 | Championship · England |
| 2016-02-27 | CharltonvReadingChampionship · England | 3–4 | Championship · England |
| 2016-02-23 | PrestonvCharltonChampionship · England | 2–1 | Championship · England |
| 2016-02-20 | FulhamvCharltonChampionship · England | 3–0 | Championship · England |
| 2016-02-13 | CharltonvCardiffChampionship · England | 0–0 | Championship · England |
| 2016-02-06 | CharltonvBristol CityChampionship · England | 0–1 | Championship · England |
| 2016-01-30 | RotherhamvCharltonChampionship · England | 1–4 | Championship · England |
| 2016-01-23 | CharltonvBlackburnChampionship · England | 1–1 | Championship · England |
| 2016-01-16 | HullvCharltonChampionship · England | 6–0 | Championship · England |
| 2016-01-12 | HuddersfieldvCharltonChampionship · England | 5–0 | Championship · England |
| 2016-01-02 | CharltonvNott'm ForestChampionship · England | 1–1 | Championship · England |