| 2006-12-30 | Nott'm ForestvTranmereLeague One · England | 1–1 | League One · England |
| 2006-12-26 | HuddersfieldvTranmereLeague One · England | 2–2 | League One · England |
| 2006-12-23 | TranmerevGillinghamLeague One · England | 2–3 | League One · England |
| 2006-12-09 | BrentfordvTranmereLeague One · England | 1–1 | League One · England |
| 2006-12-05 | ScunthorpevTranmereLeague One · England | 1–1 | League One · England |
| 2006-11-24 | TranmerevBlackpoolLeague One · England | 2–0 | League One · England |
| 2006-11-18 | BrightonvTranmereLeague One · England | 0–1 | League One · England |
| 2006-11-03 | TranmerevMillwallLeague One · England | 3–1 | League One · England |
| 2006-10-28 | TranmerevBournemouthLeague One · England | 1–0 | League One · England |
| 2006-10-21 | CarlislevTranmereLeague One · England | 1–0 | League One · England |
| 2006-10-13 | TranmerevPort ValeLeague One · England | 1–2 | League One · England |
| 2006-10-06 | SwanseavTranmereLeague One · England | 0–0 | League One · England |
| 2006-09-30 | BradfordvTranmereLeague One · England | 2–0 | League One · England |
| 2006-09-26 | TranmerevHuddersfieldLeague One · England | 2–2 | League One · England |
| 2006-09-23 | TranmerevNott'm ForestLeague One · England | 0–0 | League One · England |
| 2006-09-16 | NorthamptonvTranmereLeague One · England | 1–3 | League One · England |
| 2006-09-12 | RotherhamvTranmereLeague One · England | 2–1 | League One · England |
| 2006-09-08 | TranmerevBristol CityLeague One · England | 1–0 | League One · England |
| 2006-09-02 | TranmerevLeyton OrientLeague One · England | 3–0 | League One · England |
| 2006-08-26 | ChesterfieldvTranmereLeague One · England | 0–2 | League One · England |
| 2006-08-19 | TranmerevYeovilLeague One · England | 2–1 | League One · England |
| 2006-08-12 | DoncastervTranmereLeague One · England | 0–0 | League One · England |
| 2006-08-08 | CheltenhamvTranmereLeague One · England | 1–0 | League One · England |
| 2006-08-05 | TranmerevOldhamLeague One · England | 1–0 | League One · England |
| 2006-05-06 | TranmerevDoncasterLeague One · England | 0–2 | League One · England |
| 2006-04-29 | Milton Keynes DonsvTranmereLeague One · England | 1–2 | League One · England |
| 2006-04-22 | TranmerevBristol CityLeague One · England | 0–3 | League One · England |
| 2006-04-17 | ColchestervTranmereLeague One · England | 1–0 | League One · England |
| 2006-04-15 | TranmerevNott'm ForestLeague One · England | 0–1 | League One · England |
| 2006-04-08 | RotherhamvTranmereLeague One · England | 2–0 | League One · England |
| 2006-03-31 | TranmerevPort ValeLeague One · England | 3–0 | League One · England |
| 2006-03-25 | YeovilvTranmereLeague One · England | 2–2 | League One · England |
| 2006-03-17 | TranmerevWalsallLeague One · England | 1–2 | League One · England |
| 2006-03-11 | TranmerevChesterfieldLeague One · England | 4–1 | League One · England |
| 2006-03-07 | SwindonvTranmereLeague One · England | 1–2 | League One · England |
| 2006-02-25 | OldhamvTranmereLeague One · England | 1–0 | League One · England |
| 2006-02-18 | TranmerevBarnsleyLeague One · England | 0–1 | League One · England |
| 2006-02-14 | TranmerevHartlepoolLeague One · England | 0–0 | League One · England |
| 2006-02-11 | GillinghamvTranmereLeague One · England | 1–1 | League One · England |
| 2006-02-03 | TranmerevHuddersfieldLeague One · England | 2–1 | League One · England |
| 2006-01-28 | BradfordvTranmereLeague One · England | 0–0 | League One · England |
| 2006-01-21 | TranmerevSouthendLeague One · England | 0–0 | League One · England |
| 2006-01-14 | HartlepoolvTranmereLeague One · England | 0–0 | League One · England |
| 2006-01-07 | TranmerevBournemouthLeague One · England | 0–0 | League One · England |
| 2006-01-02 | TranmerevRotherhamLeague One · England | 3–2 | League One · England |