| 2013-12-29 | ColchestervCreweLeague One · England | 1–2 | League One · England |
| 2013-12-26 | ColchestervStevenageLeague One · England | 4–0 | League One · England |
| 2013-12-21 | OldhamvColchesterLeague One · England | 0–2 | League One · England |
| 2013-12-14 | ColchestervNotts CountyLeague One · England | 0–4 | League One · England |
| 2013-11-30 | TranmerevColchesterLeague One · England | 2–1 | League One · England |
| 2013-11-26 | ColchestervMilton Keynes DonsLeague One · England | 3–1 | League One · England |
| 2013-11-23 | PrestonvColchesterLeague One · England | 1–1 | League One · England |
| 2013-11-16 | ColchestervSwindonLeague One · England | 1–2 | League One · England |
| 2013-11-02 | RotherhamvColchesterLeague One · England | 2–2 | League One · England |
| 2013-10-26 | ColchestervPeterboroLeague One · England | 1–0 | League One · England |
| 2013-10-22 | ShrewsburyvColchesterLeague One · England | 1–1 | League One · England |
| 2013-10-19 | BrentfordvColchesterLeague One · England | 3–1 | League One · England |
| 2013-10-12 | ColchestervWalsallLeague One · England | 1–1 | League One · England |
| 2013-10-05 | ColchestervWolvesLeague One · England | 0–3 | League One · England |
| 2013-09-28 | Bristol CityvColchesterLeague One · England | 1–1 | League One · England |
| 2013-09-21 | ColchestervCrawley TownLeague One · England | 1–1 | League One · England |
| 2013-09-14 | BradfordvColchesterLeague One · England | 2–2 | League One · England |
| 2013-09-08 | CoventryvColchesterLeague One · England | 2–0 | League One · England |
| 2013-08-31 | ColchestervLeyton OrientLeague One · England | 1–2 | League One · England |
| 2013-08-23 | ColchestervCarlisleLeague One · England | 1–1 | League One · England |
| 2013-08-17 | Sheffield UnitedvColchesterLeague One · England | 1–1 | League One · England |
| 2013-08-10 | ColchestervPort ValeLeague One · England | 1–0 | League One · England |
| 2013-08-03 | GillinghamvColchesterLeague One · England | 0–1 | League One · England |
| 2013-04-27 | CarlislevColchesterLeague One · England | 0–2 | League One · England |
| 2013-04-20 | ColchestervShrewsburyLeague One · England | 0–0 | League One · England |
| 2013-04-16 | ColchestervMilton Keynes DonsLeague One · England | 0–2 | League One · England |
| 2013-04-13 | Notts CountyvColchesterLeague One · England | 3–1 | League One · England |
| 2013-04-06 | ColchestervLeyton OrientLeague One · England | 2–1 | League One · England |
| 2013-04-01 | OldhamvColchesterLeague One · England | 1–1 | League One · England |
| 2013-03-29 | ColchestervBournemouthLeague One · England | 0–1 | League One · England |
| 2013-03-16 | BuryvColchesterLeague One · England | 1–2 | League One · England |
| 2013-03-12 | CoventryvColchesterLeague One · England | 2–2 | League One · England |
| 2013-03-09 | ColchestervCreweLeague One · England | 1–2 | League One · England |
| 2013-03-05 | HartlepoolvColchesterLeague One · England | 0–0 | League One · England |
| 2013-03-02 | StevenagevColchesterLeague One · England | 0–2 | League One · England |
| 2013-02-26 | ColchestervYeovilLeague One · England | 2–0 | League One · England |
| 2013-02-23 | ColchestervTranmereLeague One · England | 1–5 | League One · England |
| 2013-02-16 | Sheffield UnitedvColchesterLeague One · England | 3–0 | League One · England |
| 2013-02-09 | ColchestervPrestonLeague One · England | 1–0 | League One · England |
| 2013-02-05 | ColchestervSwindonLeague One · England | 0–1 | League One · England |
| 2013-02-02 | PortsmouthvColchesterLeague One · England | 2–3 | League One · England |
| 2013-01-26 | ColchestervWalsallLeague One · England | 2–0 | League One · England |
| 2013-01-12 | ColchestervScunthorpeLeague One · England | 1–2 | League One · England |
| 2013-01-05 | DoncastervColchesterLeague One · England | 1–0 | League One · England |
| 2013-01-01 | Crawley TownvColchesterLeague One · England | 3–0 | League One · England |