| 2006-05-06 | YeovilvColchesterLeague One · England | 0–0 | League One · England |
| 2006-04-29 | ColchestervRotherhamLeague One · England | 2–0 | League One · England |
| 2006-04-22 | BournemouthvColchesterLeague One · England | 1–2 | League One · England |
| 2006-04-17 | ColchestervTranmereLeague One · England | 1–0 | League One · England |
| 2006-04-15 | ChesterfieldvColchesterLeague One · England | 2–2 | League One · England |
| 2006-04-11 | ColchestervHartlepoolLeague One · England | 2–0 | League One · England |
| 2006-04-08 | Nott'm ForestvColchesterLeague One · England | 1–0 | League One · England |
| 2006-04-01 | ColchestervBrentfordLeague One · England | 1–1 | League One · England |
| 2006-03-25 | ScunthorpevColchesterLeague One · England | 0–0 | League One · England |
| 2006-03-21 | DoncastervColchesterLeague One · England | 0–0 | League One · England |
| 2006-03-18 | ColchestervSwindonLeague One · England | 1–0 | League One · England |
| 2006-03-11 | OldhamvColchesterLeague One · England | 1–0 | League One · England |
| 2006-03-04 | ColchestervSouthendLeague One · England | 0–3 | League One · England |
| 2006-02-25 | BarnsleyvColchesterLeague One · England | 1–0 | League One · England |
| 2006-02-14 | ColchestervWalsallLeague One · England | 0–0 | League One · England |
| 2006-02-11 | HuddersfieldvColchesterLeague One · England | 2–0 | League One · England |
| 2006-02-07 | ColchestervScunthorpeLeague One · England | 1–0 | League One · England |
| 2006-02-04 | ColchestervBradfordLeague One · England | 3–1 | League One · England |
| 2006-01-21 | ColchestervPort ValeLeague One · England | 2–1 | League One · England |
| 2006-01-17 | ColchestervBristol CityLeague One · England | 3–2 | League One · England |
| 2006-01-14 | WalsallvColchesterLeague One · England | 0–2 | League One · England |
| 2006-01-02 | ColchestervNott'm ForestLeague One · England | 3–1 | League One · England |