| 2006-12-30 | ColchestervWolvesChampionship · England | 2–1 | Championship · England |
| 2006-12-26 | ColchestervLutonChampionship · England | 4–1 | Championship · England |
| 2006-12-23 | PrestonvColchesterChampionship · England | 1–0 | Championship · England |
| 2006-12-16 | ColchestervStokeChampionship · England | 3–0 | Championship · England |
| 2006-12-09 | Crystal PalacevColchesterChampionship · England | 1–3 | Championship · England |
| 2006-12-02 | CardiffvColchesterChampionship · England | 0–0 | Championship · England |
| 2006-11-28 | ColchestervHullChampionship · England | 5–1 | Championship · England |
| 2006-11-25 | ColchestervSouthendChampionship · England | 3–0 | Championship · England |
| 2006-11-18 | SunderlandvColchesterChampionship · England | 3–1 | Championship · England |
| 2006-11-11 | LeedsvColchesterChampionship · England | 3–0 | Championship · England |
| 2006-11-04 | ColchestervCardiffChampionship · England | 3–1 | Championship · England |
| 2006-10-31 | NorwichvColchesterChampionship · England | 1–1 | Championship · England |
| 2006-10-28 | ColchestervSouthamptonChampionship · England | 2–0 | Championship · England |
| 2006-10-23 | CoventryvColchesterChampionship · England | 2–1 | Championship · England |
| 2006-10-18 | ColchestervSheffield WedsChampionship · England | 4–0 | Championship · England |
| 2006-10-14 | WolvesvColchesterChampionship · England | 1–0 | Championship · England |
| 2006-09-29 | ColchestervIpswichChampionship · England | 1–0 | Championship · England |
| 2006-09-23 | LeicestervColchesterChampionship · England | 0–0 | Championship · England |
| 2006-09-16 | ColchestervQPRChampionship · England | 2–1 | Championship · England |
| 2006-09-12 | LutonvColchesterChampionship · England | 1–1 | Championship · England |
| 2006-09-09 | BurnleyvColchesterChampionship · England | 1–2 | Championship · England |
| 2006-08-26 | ColchestervDerbyChampionship · England | 4–3 | Championship · England |
| 2006-08-19 | West BromvColchesterChampionship · England | 2–1 | Championship · England |
| 2006-08-12 | ColchestervBarnsleyChampionship · England | 1–2 | Championship · England |
| 2006-08-08 | ColchestervPlymouthChampionship · England | 0–1 | Championship · England |
| 2006-08-05 | BirminghamvColchesterChampionship · England | 2–1 | Championship · England |